PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_26907
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family LSD
Protein Properties Length: 254aa    MW: 27070.5 Da    PI: 6.4892
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_26907genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1361.1e-11170193124
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                 Cg+C  lLsYPrG+++++Ca+C+t
  PEQU_26907 170 CGSCSELLSYPRGSKYIQCACCQT 193
                 ***********************9 PP

2zf-LSD132.41.6e-10208232125
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                 Cg+C +lL+YP+ ++s RC++C++V
  PEQU_26907 208 CGKCSVLLMYPYTSSSLRCSSCHHV 232
                 ************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.7E-14167197IPR005735Zinc finger, LSD1-type
PfamPF069435.0E-9170193IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.2E-7206234IPR005735Zinc finger, LSD1-type
PfamPF069439.0E-8208232IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSSSPDSIPP GWEEAIASSP ETLPPGFENH SSLSSPTSPP QENPPSSLSS PASPQPQENQ  60
VNCTDTSLSP SPTLPKESRS KHPPSSLNPP QENRIPLSHS PRPPPQEAPV SLSISFPPPL  120
LEKRDAMPRP SLQSQDGQGP VPSSQFPRGN LGSLNPPLQQ SLPEMGQMVC GSCSELLSYP  180
RGSKYIQCAC CQTTNFVLEA HQVGIVKCGK CSVLLMYPYT SSSLRCSSCH HVTEIGPQNV  240
RPPVSVLQGF PAPP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.11e-33lsd one like 2